View source for 20240053958. METHOD OF MULTIPLE SEQUENCE ALIGNMENT USING CONTINUOUS POSITION SOLVING AND QUANTIZATION WITH BEAD-ATTRACTION MODEL simplified abstract (Unknown Organization)

=METHOD OF MULTIPLE SEQUENCE ALIGNMENT USING CONTINUOUS POSITION SOLVING AND QUANTIZATION WITH BEAD-ATTRACTION MODEL=


==Organization Name==

[[:Category:Unknown Organization|Unknown Organization]]


[[Category:Unknown Organization]]

==Inventor(s)==

[[:Category:Daniel Kim of Chappaqua NY (US)|Daniel Kim of Chappaqua NY (US)]][[Category:Daniel Kim of Chappaqua NY (US)]]

==METHOD OF MULTIPLE SEQUENCE ALIGNMENT USING CONTINUOUS POSITION SOLVING AND QUANTIZATION WITH BEAD-ATTRACTION MODEL - A simplified explanation of the abstract==


This abstract first appeared for US patent application 20240053958 titled 'METHOD OF MULTIPLE SEQUENCE ALIGNMENT USING CONTINUOUS POSITION SOLVING AND QUANTIZATION WITH BEAD-ATTRACTION MODEL

==Simplified Explanation==

The patent application describes a method for aligning multiple sequences by modeling each sequence as a rod with interacting beads. 

* Method maps input sequences to 1-dimensional coordinates representing bead positions.
* Defines attractive and repulsive interactions among beads on the sequences.
* Calculates steady-state coordinates balancing interacting forces or momentum.
* Updates coordinates in small steps to obtain solved steady-state coordinates.
* Quantization process converts final coordinates into integer values for output sequences or alignment results.

== Potential Applications ==
This technology could be applied in bioinformatics for aligning DNA or protein sequences, in computer science for text alignment, and in robotics for path planning.

== Problems Solved ==
This technology solves the problem of efficiently aligning multiple sequences with complex interactions between elements.

== Benefits ==
* Accurate alignment of sequences
* Efficient computation of interactions
* Versatile application in various fields such as bioinformatics, computer science, and robotics.


==Original Abstract Submitted==

embodiments of the invention are directed to a method for aligning multiple sequences that models each sequence as a rod with interacting beads. the method begins by mapping each of the input sequences to a set of 1-dimensional coordinates that represent positions of beads. the method also defines attractive and repulsive interactions among beads on same or different sequences. in a non-limiting example of the method, steady-state coordinates that balance interacting forces or momentum can be obtained by updating coordinates in a small step. the solved steady-state coordinates are not integer numbers but decimal numbers. finally, a quantization process is performed to convert the final coordinates into integer values and eventually into output sequences or alignment results.



[[Category:G06F7/24]]
[[Category:G06F17/11]]